cis-Decoder - Tutorial
The following pages depict key steps in the cis-Decoder analysis.

Select images to enlarge. Begin tutorial.

1. Generate an EvoPrint of the cis-regulatory module of interest

2. Initiating a cis-Decoder database search

3. Parsed conserved sequence blocks (CSBs)

4. Identified repeat and palindrome sequence (RPS) elements

5. Selecting database search constraints

6. CSB database search results and comparative metrics (Scorecard)

7. Accessing alignment data - The cis-Decoder alignment page

8. Shared sequence elements between input and database CSCs

9. Repeat elements in the input and database CSCs that are not shared

10. Repeat balance map

11. Database CSC FASTA sequence and EvoPrint data

12. Genomic location of the database CSC